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  5. At2g41080

At2g41080


Description : Pentatricopeptide repeat-containing protein At2g41080 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9M4]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g41080
Cluster HCCA clusters: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
114142 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At2g02980 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.03 Orthogroups_2024-Update
At3g16610 No alias Pentatricopeptide repeat-containing protein At3g16610... 0.04 Orthogroups_2024-Update
Bradi1g03670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g57730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g14000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Brara.B03138.1 No alias RNA editing factor *(OTP85) 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G096602 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Glyma.09G180500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G236700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G069901 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G001700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G150300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G061600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G079860.2 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G066140.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os02g26940 No alias vegetative storage protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g14130 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00001463-RA No alias (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00025245-RA No alias (at3g03580 : 656.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00054324-RA No alias (at3g24000 : 542.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00055621-RA No alias (at1g16480 : 701.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056121-RA No alias (at4g13650 : 672.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.008G052200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G241100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G152000 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
Seita.7G042500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G057100.1 No alias RNA editing factor *(OTP85) 0.04 Orthogroups_2024-Update
Sobic.003G337200.1 No alias RNA editing factor *(MEF10) 0.03 Orthogroups_2024-Update
Solyc02g094480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc10g054730 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen01g037380 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g038750 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen03g038010 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen07g004410 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 517 639
IPR002885 Pentatricopeptide_repeat 241 287
IPR002885 Pentatricopeptide_repeat 417 441
IPR002885 Pentatricopeptide_repeat 448 474
IPR002885 Pentatricopeptide_repeat 81 109
IPR002885 Pentatricopeptide_repeat 344 370
IPR002885 Pentatricopeptide_repeat 143 172
IPR002885 Pentatricopeptide_repeat 381 408
IPR002885 Pentatricopeptide_repeat 114 139
IPR002885 Pentatricopeptide_repeat 316 337
No external refs found!