1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU1Hr1G030930.12

HORVU1Hr1G030930.12


Description : component *(MSH2) of MSH2-x mismatch repair heterodimers


Gene families : OG_42_0006421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006421_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G030930.12
Cluster HCAA Clusters: Cluster_74


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006298 mismatch repair IEA 16Dec
MF GO:0030983 mismatched DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007861 DNA_mismatch_repair_MutS_clamp 472 565
IPR000432 DNA_mismatch_repair_MutS_C 664 862
IPR007695 DNA_mismatch_repair_MutS-lik_N 26 131
IPR007860 DNA_mmatch_repair_MutS_con_dom 155 286
IPR007696 DNA_mismatch_repair_MutS_core 303 608
No external refs found!