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Description : cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)
Gene families : OG_42_0002740 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002740_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Hordeum vulgare: HORVU1Hr1G038620.27 | |
| Cluster | HCAA Clusters: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi3g28060 | No alias | plastid transcriptionally active 3 | 0.04 | Orthogroups_2024-Update | |
| Kfl00134_0090 | kfl00134_0090_v1.1 | (at3g04260 : 185.0) plastid transcriptionally active 3... | 0.02 | Orthogroups_2024-Update | |
| Seita.9G231500.1 | No alias | cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3) | 0.04 | Orthogroups_2024-Update | |
| Sopen04g021370 | No alias | Pentatricopeptide repeat domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Predicted GO |
| MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Predicted GO |
| MF | GO:0005524 | ATP binding | IEP | Predicted GO |
| CC | GO:0005666 | RNA polymerase III complex | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006383 | transcription by RNA polymerase III | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006457 | protein folding | IEP | Predicted GO |
| BP | GO:0006629 | lipid metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Predicted GO |
| MF | GO:0008144 | drug binding | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
| MF | GO:0016881 | acid-amino acid ligase activity | IEP | Predicted GO |
| MF | GO:0016887 | ATPase activity | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Predicted GO |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |