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  5. HORVU1Hr1G054300.19

HORVU1Hr1G054300.19


Description : scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G054300.19
Cluster HCAA Clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Bradi1g78550 No alias transcription regulators 0.07 Orthogroups_2024-Update
Bradi3g33190 No alias transcription regulators 0.07 Orthogroups_2024-Update
Kfl00339_0110 kfl00339_0110_v1.1 (at1g02080 : 768.0) transcription regulators; FUNCTIONS... 0.02 Orthogroups_2024-Update
MA_42843g0010 No alias (at1g02080 : 1165.0) transcription regulators; FUNCTIONS... 0.03 Orthogroups_2024-Update
Mp3g11860.1 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.02 Orthogroups_2024-Update
Pp1s41_25V6 No alias T7I23.15; transcriptional regulator-related [Arabidopsis... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR024557 CCR4-Not_Not1su_DUF3819 1316 1454
IPR032193 CNOT1_TTP_bind 650 813
IPR032194 CNOT1_HEAT 470 616
IPR032191 CNOT1_CAF1_bind 973 1192
No external refs found!