At2g42830

Description : K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT2G42830]

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At2g42830
Cluster	HCCA clusters: Cluster_197

Target	Alias	Description	ECC score	Gene Family Method
A4A49_10096	No alias	mads-box protein soc1	0.02	Orthogroups_2024-Update
A4A49_11564	No alias	developmental protein sepallata 1	0.02	Orthogroups_2024-Update
A4A49_14235	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_14828	No alias	agamous-like mads-box protein agl104	0.04	Orthogroups_2024-Update
A4A49_16645	No alias	agamous-like mads-box protein agl11	0.03	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.03	Orthogroups_2024-Update
At5g23260	No alias	K-box region and MADS-box transcription factor family...	0.03	Orthogroups_2024-Update
Bradi2g24940	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.D01509.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I02486.1	No alias	MADS/AGL-type transcription factor	0.04	Orthogroups_2024-Update
GRMZM2G018589	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.04G142550	No alias	AGAMOUS-like 15	0.04	Orthogroups_2024-Update
Glyma.05G163200	No alias	K-box region and MADS-box transcription factor family protein	0.01	Orthogroups_2024-Update
Glyma.09G266400	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Glyma.10G084800	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Glyma.10G085900	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
HORVU1Hr1G051660.8	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU7Hr1G081070.1	No alias	MADS/AGL-type transcription factor	0.05	Orthogroups_2024-Update
LOC_Os12g31748	No alias	OsMADS20 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
MA_101463g0010	No alias	(q9xj60\|mad50_orysa : 102.0) MADS-box transcription...	0.03	Orthogroups_2024-Update
MA_458668g0010	No alias	(at2g45660 : 100.0) Controls flowering and is required...	0.04	Orthogroups_2024-Update
PSME_00042999-RA	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Potri.001G284600	No alias	AGAMOUS-like 17	0.03	Orthogroups_2024-Update
Potri.003G119700	No alias	AGAMOUS-like 19	0.03	Orthogroups_2024-Update
Potri.007G087500	No alias	AGAMOUS-like 66	0.03	Orthogroups_2024-Update
Potri.011G075800	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Pp1s118_161V6	No alias	mikc* mads-box transcription factor	0.02	Orthogroups_2024-Update
Pp1s163_73V6	No alias	mikc* mads-box transcription factor	0.02	Orthogroups_2024-Update
Seita.3G098400.1	No alias	MADS/AGL-type transcription factor	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0004743	pyruvate kinase activity	IEP	Predicted GO
MF	GO:0005543	phospholipid binding	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
MF	GO:0008289	lipid binding	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predicted GO
MF	GO:0030570	pectate lyase activity	IEP	Predicted GO
MF	GO:0030955	potassium ion binding	IEP	Predicted GO
MF	GO:0031420	alkali metal ion binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	25	72
IPR002487	TF_Kbox	100	186

External Links

No external refs found!

At2g42830

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation