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  5. HORVU1Hr1G058440.4

HORVU1Hr1G058440.4


Description : histone *(H2B)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G058440.4
Cluster HCAA Clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
7113 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.04 Orthogroups_2024-Update
Bradi2g23230 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g54520 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.02 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.I03652.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Cre06.g264800 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g268250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g271376 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274250 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274750 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g276550 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g276900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre17.g709150 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g711750 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G057852 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G071959 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G141432 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G305027 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G306258 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.07 Orthogroups_2024-Update
Glyma.10G198500 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G141600 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G141700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G142100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065400 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G132100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G321600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G173400 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.20G191600 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G085540.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU3Hr1G086610.4 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU5Hr1G094500.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
HORVU7Hr1G110310.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update
MA_10428006g0010 No alias (at3g45980 : 145.0) Encodes a histone 2B (H2B) protein.... 0.04 Orthogroups_2024-Update
MA_17795g0010 No alias (o22582|h2b_goshi : 174.0) Histone H2B - Gossypium... 0.03 Orthogroups_2024-Update
PSME_00000376-RA No alias (p54347|h2b4_chlre : 153.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update
Pp1s117_2V6 No alias histone h2b 0.02 Orthogroups_2024-Update
Pp1s34_255V6 No alias histone h2b 0.03 Orthogroups_2024-Update
Pp1s56_226V6 No alias histone h2b 0.02 Orthogroups_2024-Update
Seita.5G107600.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.04 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.03 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.04 Orthogroups_2024-Update
Solyc06g074780 No alias Histone H2B (AHRD V3.3 *** K4C9J5_SOLLC) 0.05 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.04 Orthogroups_2024-Update
Solyc06g075800 No alias Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.04 Orthogroups_2024-Update
Solyc11g007930 No alias Histone H2B (AHRD V3.3 *** K4D554_SOLLC) 0.03 Orthogroups_2024-Update
Solyc11g066430 No alias histone H2B 0.04 Orthogroups_2024-Update
Sopen03g019890 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
evm.model.contig_498.4 No alias (p16868|h2b4_volca : 127.0) Histone H2B.4 (H2B-IV) -... 0.04 Orthogroups_2024-Update
evm.model.tig00000944.18 No alias (p16868|h2b4_volca : 122.0) Histone H2B.4 (H2B-IV) -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 27 149
No external refs found!