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  5. At2g42920

At2g42920


Description : Pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJG6]


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At2g42920
Cluster HCCA clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
106991 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
133644 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
399 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
At1g25360 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.03 Orthogroups_2024-Update
At5g39350 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Orthogroups_2024-Update
At5g39680 No alias Pentatricopeptide repeat-containing protein At5g39680... 0.03 Orthogroups_2024-Update
Bradi1g05610 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g75980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g61387 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g40340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.F00497.1 No alias RNA editing factor *(OTP82) 0.03 Orthogroups_2024-Update
Brara.G02157.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.10G240000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G027440.18 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_40997g0010 No alias (at4g02750 : 642.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_4503g0010 No alias (at2g27610 : 599.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 191 219
IPR002885 Pentatricopeptide_repeat 222 269
IPR002885 Pentatricopeptide_repeat 326 370
IPR002885 Pentatricopeptide_repeat 296 318
IPR002885 Pentatricopeptide_repeat 428 448
IPR002885 Pentatricopeptide_repeat 91 117
IPR002885 Pentatricopeptide_repeat 165 190
IPR002885 Pentatricopeptide_repeat 397 422
No external refs found!