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  5. HORVU1Hr1G079370.1

HORVU1Hr1G079370.1


Description : component *(eL28) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002199_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU1Hr1G079370.1
Cluster HCAA Clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
164298 No alias Ribosomal L28e protein family 0.18 Orthogroups_2024-Update
A4A49_23451 No alias 60s ribosomal protein l28-1 0.11 Orthogroups_2024-Update
A4A49_64591 No alias 60s ribosomal protein l28-1 0.16 Orthogroups_2024-Update
Bradi2g18150 No alias Ribosomal L28e protein family 0.08 Orthogroups_2024-Update
Bradi2g47760 No alias Ribosomal L28e protein family 0.12 Orthogroups_2024-Update
Brara.A00789.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Brara.G00081.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Brara.H01443.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.I01133.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.I04724.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Brara.K00891.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Cre11.g467578 No alias Ribosomal L28e protein family 0.24 Orthogroups_2024-Update
GRMZM2G088060 No alias Ribosomal L28e protein family 0.03 Orthogroups_2024-Update
Glyma.07G012800 No alias Ribosomal L28e protein family 0.1 Orthogroups_2024-Update
Glyma.08G196500 No alias Ribosomal L28e protein family 0.09 Orthogroups_2024-Update
Glyma.13G352100 No alias Ribosomal L28e protein family 0.08 Orthogroups_2024-Update
Glyma.15G022700 No alias Ribosomal L28e protein family 0.03 Orthogroups_2024-Update
Kfl00166_0150 kfl00166_0150_v1.1 (at4g29410 : 108.0) Ribosomal L28e protein family;... 0.13 Orthogroups_2024-Update
LOC_Os01g51020 No alias 60S ribosomal protein L28-1, putative, expressed 0.03 Orthogroups_2024-Update
MA_10428490g0010 No alias (at2g19730 : 181.0) Ribosomal L28e protein family;... 0.05 Orthogroups_2024-Update
Mp1g26940.1 No alias component RPL28 of LSU proteome component 0.15 Orthogroups_2024-Update
PSME_00007702-RA No alias (at2g19730 : 186.0) Ribosomal L28e protein family;... 0.08 Orthogroups_2024-Update
Potri.001G194000 No alias Ribosomal L28e protein family 0.11 Orthogroups_2024-Update
Potri.T165500 No alias Ribosomal L28e protein family 0.08 Orthogroups_2024-Update
Pp1s21_390V6 No alias 60s ribosomal protein l28 0.02 Orthogroups_2024-Update
Pp1s505_8V6 No alias 60s ribosomal protein l28 0.23 Orthogroups_2024-Update
Pp1s7_390V6 No alias 60s ribosomal protein l28 0.13 Orthogroups_2024-Update
Pp1s98_65V6 No alias 60s ribosomal protein l28 0.12 Orthogroups_2024-Update
Seita.3G162800.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Seita.5G288600.1 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Sobic.009G215200.2 No alias component *(eL28) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Solyc03g121330 No alias 60S ribosomal protein L28, putative (AHRD V3.3 *** B9RKC5_RICCO) 0.22 Orthogroups_2024-Update
Solyc06g062500 No alias 60S ribosomal protein L28, putative (AHRD V3.3 *** B9RKC5_RICCO) 0.03 Orthogroups_2024-Update
Sopen03g040140 No alias Ribosomal L28e protein family 0.27 Orthogroups_2024-Update
Sopen12g022910 No alias Ribosomal L28e protein family 0.18 Orthogroups_2024-Update
evm.model.contig_471.3 No alias no hits & (original description: no original description) 0.26 Orthogroups_2024-Update
evm.model.tig00020710.93 No alias no hits & (original description: no original description) 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005849 mRNA cleavage factor complex IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006378 mRNA polyadenylation IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029004 L28e/Mak16 8 129
No external refs found!