HORVU1Hr1G088040.2

Description : component *(eL20) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001510_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU1Hr1G088040.2
Cluster	HCAA Clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
227198	No alias	Ribosomal protein L18ae/LX family protein	0.12	Orthogroups_2024-Update
A4A49_41727	No alias	60s ribosomal protein l18a	0.13	Orthogroups_2024-Update
A4A49_56604	No alias	60s ribosomal protein l18a	0.12	Orthogroups_2024-Update
At2g34480	No alias	Ribosomal protein L18ae/LX family protein...	0.03	Orthogroups_2024-Update
Bradi2g16430	No alias	Ribosomal protein L18ae/LX family protein	0.21	Orthogroups_2024-Update
Bradi2g46010	No alias	Ribosomal protein L18ae/LX family protein	0.16	Orthogroups_2024-Update
Bradi2g50020	No alias	Ribosomal protein L18ae/LX family protein	0.1	Orthogroups_2024-Update
Brara.C01744.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.C03533.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Brara.D02096.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.21	Orthogroups_2024-Update
Brara.E00977.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Brara.E02666.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Cre01.g047750	No alias	Ribosomal protein L18ae/LX family protein	0.14	Orthogroups_2024-Update
GRMZM2G022619	No alias	Ribosomal protein L18ae/LX family protein	0.11	Orthogroups_2024-Update
Glyma.02G284900	No alias	Ribosomal protein L18ae/LX family protein	0.03	Orthogroups_2024-Update
Glyma.13G217100	No alias	Ribosomal protein L18ae/LX family protein	0.02	Orthogroups_2024-Update
Glyma.14G029901	No alias	Ribosomal protein L18ae/LX family protein	0.11	Orthogroups_2024-Update
Glyma.15G095400	No alias	Ribosomal protein L18ae/LX family protein	0.07	Orthogroups_2024-Update
Glyma.18G110000	No alias	Ribosomal protein L18ae/LX family protein	0.05	Orthogroups_2024-Update
Kfl00905_0040	kfl00905_0040_v1.1	(at2g34480 : 295.0) Ribosomal protein L18ae/LX family...	0.05	Orthogroups_2024-Update
LOC_Os01g47660	No alias	60S ribosomal protein L18a, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os01g54870	No alias	60S ribosomal protein L18a, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os05g49030	No alias	60S ribosomal protein L18a, putative, expressed	0.03	Orthogroups_2024-Update
MA_12029g0010	No alias	(q943f3\|rl18a_orysa : 339.0) 60S ribosomal protein L18a...	0.05	Orthogroups_2024-Update
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.14	Orthogroups_2024-Update
PSME_00023758-RA	No alias	(q943f3\|rl18a_orysa : 335.0) 60S ribosomal protein L18a...	0.05	Orthogroups_2024-Update
Potri.002G057600	No alias	Ribosomal protein L18ae/LX family protein	0.13	Orthogroups_2024-Update
Potri.004G063400	No alias	Ribosomal protein L18ae/LX family protein	0.04	Orthogroups_2024-Update
Pp1s184_111V6	No alias	60s ribosomal protein l18a	0.21	Orthogroups_2024-Update
Pp1s44_13V6	No alias	60s ribosomal protein l18a	0.09	Orthogroups_2024-Update
Pp1s56_243V6	No alias	60s ribosomal protein l18a	0.08	Orthogroups_2024-Update
Pp1s74_193V6	No alias	60s ribosomal protein l18a	0.26	Orthogroups_2024-Update
Seita.3G145500.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Seita.5G262600.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Seita.8G085600.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Sobic.003G249700.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Sobic.005G091700.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.19	Orthogroups_2024-Update
Sobic.009G233400.1	No alias	component *(eL20) of large ribosomal-subunit (LSU) proteome	0.23	Orthogroups_2024-Update
Solyc02g070640	No alias	60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU)	0.27	Orthogroups_2024-Update
Solyc02g070650	No alias	60S ribosomal protein L18a (AHRD V3.3 *** Q3HRW8_SOLTU)	0.23	Orthogroups_2024-Update
Solyc06g065590	No alias	60S ribosomal protein L18a (AHRD V3.3 *** K4C7I8_SOLLC)	0.13	Orthogroups_2024-Update
Solyc08g016180	No alias	60S ribosomal protein L18a (AHRD V3.3 *** K4CJE2_SOLLC)	0.21	Orthogroups_2024-Update
Sopen02g019720	No alias	Ribosomal L18ae/LX protein domain	0.07	Orthogroups_2024-Update
Sopen02g019730	No alias	Ribosomal L18ae/LX protein domain	0.11	Orthogroups_2024-Update
Sopen06g024090	No alias	Ribosomal L18ae/LX protein domain	0.11	Orthogroups_2024-Update
Sopen08g006530	No alias	Ribosomal L18ae/LX protein domain	0.28	Orthogroups_2024-Update
evm.model.contig_448.2	No alias	(q943f3\|rl18a_orysa : 186.0) 60S ribosomal protein L18a...	0.27	Orthogroups_2024-Update
evm.model.tig00000615.59	No alias	(at1g29970 : 221.0) 60S ribosomal protein L18A-1;...	0.15	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006553	lysine metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Predicted GO
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009085	lysine biosynthetic process	IEP	Predicted GO
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predicted GO
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	7	128

External Links

No external refs found!

HORVU1Hr1G088040.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation