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  5. HORVU2Hr1G013790.2

HORVU2Hr1G013790.2


Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG_42_0002144 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G013790.2
Cluster HCAA Clusters: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Bradi1g16570 No alias HEAT repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi2g47267 No alias Function unknown 0.04 Orthogroups_2024-Update
Glyma.01G121400 No alias HEAT repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.04G089400 No alias Function unknown 0.04 Orthogroups_2024-Update
MA_10432378g0010 No alias (at1g27590 : 201.0) CONTAINS InterPro DOMAIN/s: Protein... 0.03 Orthogroups_2024-Update
Seita.5G281700.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 Orthogroups_2024-Update
Sobic.002G430300.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 Orthogroups_2024-Update
Sobic.004G291900.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022075 Symplekin_C 946 1124
IPR032460 Symplekin/Pta1_N 29 232
No external refs found!