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  5. HORVU2Hr1G027370.1

HORVU2Hr1G027370.1


Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex


Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G027370.1
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
81986 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
A4A49_39430 No alias haca ribonucleoprotein complex subunit 4 0.03 Orthogroups_2024-Update
At3g57150 No alias Uncharacterized protein At3g57150 (Fragment)... 0.05 Orthogroups_2024-Update
Bradi2g04950 No alias homologue of NAP57 0.07 Orthogroups_2024-Update
Bradi4g38770 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
Brara.G01728.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 Orthogroups_2024-Update
Cre03.g172950 No alias homologue of NAP57 0.01 Orthogroups_2024-Update
GRMZM2G044128 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
GRMZM2G172956 No alias homologue of NAP57 0.05 Orthogroups_2024-Update
Glyma.08G176900 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
Glyma.15G056100 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
Kfl00043_0130 kfl00043_0130_v1.1 (at3g57150 : 649.0) Encodes a putative pseudouridine... 0.04 Orthogroups_2024-Update
LOC_Os03g25450 No alias h/ACA ribonucleoprotein complex subunit 4, putative, expressed 0.07 Orthogroups_2024-Update
MA_27456g0030 No alias (at3g57150 : 683.0) Encodes a putative pseudouridine... 0.03 Orthogroups_2024-Update
PSME_00057055-RA No alias (at3g57150 : 685.0) Encodes a putative pseudouridine... 0.03 Orthogroups_2024-Update
Potri.006G044100 No alias homologue of NAP57 0.05 Orthogroups_2024-Update
Potri.016G041200 No alias homologue of NAP57 0.04 Orthogroups_2024-Update
Seita.2G404800.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.07 Orthogroups_2024-Update
Seita.5G057000.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.09 Orthogroups_2024-Update
Sobic.002G389500.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.08 Orthogroups_2024-Update
Sobic.003G117100.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.1 Orthogroups_2024-Update
Solyc02g081810 No alias H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***... 0.06 Orthogroups_2024-Update
Sopen02g026410 No alias DKCLD (NUC011) domain 0.04 Orthogroups_2024-Update
evm.model.tig00000553.10 No alias (at3g57150 : 635.0) Encodes a putative pseudouridine... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 123 239
IPR032819 TruB_C 240 306
IPR002478 PUA 310 382
IPR012960 Dyskerin-like 62 119
No external refs found!