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  5. HORVU2Hr1G030880.1

HORVU2Hr1G030880.1


Description : component *(uS2) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G030880.1
Cluster HCAA Clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
36118 No alias 40s ribosomal protein SA 0.12 Orthogroups_2024-Update
At1g72370 No alias 40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1] 0.03 Orthogroups_2024-Update
Bradi1g20880 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
Bradi1g23780 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
Bradi1g60310 No alias 40s ribosomal protein SA B 0.11 Orthogroups_2024-Update
Bradi1g72480 No alias 40s ribosomal protein SA B 0.12 Orthogroups_2024-Update
Brara.B02024.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.15 Orthogroups_2024-Update
Brara.D01465.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Brara.G02358.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Brara.G03124.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Cre10.g432800 No alias 40s ribosomal protein SA B 0.01 Orthogroups_2024-Update
GRMZM2G092719 No alias 40s ribosomal protein SA B 0.06 Orthogroups_2024-Update
GRMZM2G099657 No alias 40s ribosomal protein SA B 0.02 Orthogroups_2024-Update
GRMZM2G126821 No alias 40s ribosomal protein SA B 0.13 Orthogroups_2024-Update
GRMZM2G145308 No alias 40s ribosomal protein SA B 0.08 Orthogroups_2024-Update
GRMZM2G159237 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
Glyma.07G043800 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
Glyma.08G159800 No alias 40s ribosomal protein SA B 0.09 Orthogroups_2024-Update
Glyma.15G267100 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
Glyma.16G012200 No alias 40s ribosomal protein SA B 0.06 Orthogroups_2024-Update
HORVU4Hr1G077240.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
LOC_Os03g08440 No alias ribosomal protein S2, putative, expressed 0.03 Orthogroups_2024-Update
Mp2g26290.1 No alias component RPSa of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00044639-RA No alias (o80377|rssa_dauca : 414.0) 40S ribosomal protein SA... 0.02 Orthogroups_2024-Update
Potri.001G164000 No alias 40s ribosomal protein SA 0.03 Orthogroups_2024-Update
Potri.003G071200 No alias 40s ribosomal protein SA B 0.09 Orthogroups_2024-Update
Potri.012G117600 No alias 40s ribosomal protein SA B 0.07 Orthogroups_2024-Update
Pp1s173_16V6 No alias 40s ribosomal protein 0.05 Orthogroups_2024-Update
Pp1s48_103V6 No alias 40s ribosomal protein sa 0.1 Orthogroups_2024-Update
Pp1s59_133V6 No alias 40s ribosomal protein sa 0.02 Orthogroups_2024-Update
Seita.2G389700.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Seita.9G371600.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Seita.9G517100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Sobic.002G374900.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.2 Orthogroups_2024-Update
Sobic.002G375100.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Sobic.005G229300.1 No alias component *(uS2) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Solyc03g019780 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC) 0.09 Orthogroups_2024-Update
Solyc06g072120 No alias 40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC) 0.15 Orthogroups_2024-Update
Sopen03g029850 No alias Ribosomal protein S2 0.17 Orthogroups_2024-Update
Sopen06g028410 No alias Ribosomal protein S2 0.1 Orthogroups_2024-Update
evm.model.contig_4456.25 No alias (o22518|rssa_soybn : 282.0) 40S ribosomal protein SA... 0.17 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006448 regulation of translational elongation IEP Predicted GO
BP GO:0006449 regulation of translational termination IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009891 positive regulation of biosynthetic process IEP Predicted GO
BP GO:0009893 positive regulation of metabolic process IEP Predicted GO
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010628 positive regulation of gene expression IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
BP GO:0031325 positive regulation of cellular metabolic process IEP Predicted GO
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043243 positive regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045727 positive regulation of translation IEP Predicted GO
BP GO:0045901 positive regulation of translational elongation IEP Predicted GO
BP GO:0045905 positive regulation of translational termination IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0051130 positive regulation of cellular component organization IEP Predicted GO
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051247 positive regulation of protein metabolic process IEP Predicted GO
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 119 185
IPR001865 Ribosomal_S2 21 116
IPR032281 40S_SA_C 205 304
No external refs found!