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  5. HORVU2Hr1G032220.4

HORVU2Hr1G032220.4


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G032220.4
Cluster HCAA Clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
73566 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
At2g47280 No alias Probable pectinesterase 66... 0.04 Orthogroups_2024-Update
At5g47500 No alias Probable pectinesterase 68... 0.02 Orthogroups_2024-Update
Bradi1g21810 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g00840 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.J01006.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
GRMZM2G120779 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G294700 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G014500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Kfl00053_0010 kfl00053_0010_v1.1 (at3g29090 : 107.0) Encodes an atypical pectin... 0.02 Orthogroups_2024-Update
LOC_Os08g12410 No alias pectinesterase, putative, expressed 0.06 Orthogroups_2024-Update
PSME_00022041-RA No alias (at5g55590 : 238.0) Encodes a protein with pectin... 0.03 Orthogroups_2024-Update
PSME_00033773-RA No alias (at2g36710 : 272.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.016G017700 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s112_177V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s129_155V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s215_36V6 No alias pectin methylesterase 0.04 Orthogroups_2024-Update
Pp1s3_508V6 No alias pectinesterase ppe8b 0.02 Orthogroups_2024-Update
Pp1s446_3V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s45_249V6 No alias pectin methylesterase 0.05 Orthogroups_2024-Update
Pp1s55_167V6 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Solyc04g080530 No alias Pectinesterase (AHRD V3.3 *** K4BVD2_SOLLC) 0.02 Orthogroups_2024-Update
Solyc12g098340 No alias Pectinesterase (AHRD V3.3 *** K4DHK8_SOLLC) 0.02 Orthogroups_2024-Update
Sopen07g033560 No alias Pectinesterase 0.03 Orthogroups_2024-Update
Sopen09g034620 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 188 369
No external refs found!