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  5. HORVU2Hr1G040410.5

HORVU2Hr1G040410.5


Description : LAV-VAL-type transcription factor & regulatory protein *(VAL) of PRC1 complex


Gene families : OG_42_0001758 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001758_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G040410.5
Cluster HCAA Clusters: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
Glyma.03G035200 No alias HSI2-like 1 0.03 Orthogroups_2024-Update
Glyma.14G204400 No alias high-level expression of sugar-inducible gene 2 0.02 Orthogroups_2024-Update
Seita.2G432900.1 No alias LAV-VAL-type transcription factor & regulatory protein... 0.04 Orthogroups_2024-Update
Solyc06g082520 No alias B3 domain-containing protein (AHRD V3.3 *** W9SAB7_9ROSA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011124 Znf_CW 631 673
IPR003340 B3_DNA-bd 369 468
No external refs found!