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  5. HORVU2Hr1G076970.5

HORVU2Hr1G076970.5


Description : RNA editing factor *(SLG1)


Gene families : OG_42_0009363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G076970.5
Cluster HCAA Clusters: Cluster_243


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0018142 protein-DNA covalent cross-linking IEP Predicted GO
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 566 591
IPR002885 Pentatricopeptide_repeat 595 619
IPR002885 Pentatricopeptide_repeat 151 181
IPR002885 Pentatricopeptide_repeat 535 557
IPR002885 Pentatricopeptide_repeat 358 405
IPR002885 Pentatricopeptide_repeat 687 735
IPR002885 Pentatricopeptide_repeat 255 295
No external refs found!