1. Home
  2. Species
  3. Hordeum vulgare
  4. Sequence
  5. HORVU2Hr1G078260.12

HORVU2Hr1G078260.12


Description : Unknown function


Gene families : OG_42_0008048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G078260.12
Cluster HCAA Clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Glyma.17G049100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Sopen01g047140 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 32 57
IPR002885 Pentatricopeptide_repeat 103 130
IPR002885 Pentatricopeptide_repeat 347 395
IPR002885 Pentatricopeptide_repeat 206 253
IPR002885 Pentatricopeptide_repeat 135 184
IPR002885 Pentatricopeptide_repeat 276 325
No external refs found!