HORVU2Hr1G079920.4


Description : component *(LHCb6) of LHC-II complex


Gene families : OG_42_0005004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005004_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G079920.4
Cluster HCAA Clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
271833 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
A4A49_19796 No alias chlorophyll a-b binding protein cp24 10a, chloroplastic 0.05 Orthogroups_2024-Update
At1g15820 No alias Chlorophyll a-b binding protein, chloroplastic... 0.05 Orthogroups_2024-Update
Bradi5g12150 No alias light harvesting complex photosystem II subunit 6 0.08 Orthogroups_2024-Update
Brara.F01095.1 No alias component *(LHCb6) of LHC-II complex 0.08 Orthogroups_2024-Update
Brara.H02525.1 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.I04910.1 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
GRMZM2G088983 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
GRMZM2G092427 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Glyma.08G074000 No alias light harvesting complex photosystem II subunit 6 0.06 Orthogroups_2024-Update
Glyma.08G180000 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Glyma.15G052400 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
Kfl00276_0010 kfl00276_0010_v1.1 (at1g15820 : 338.0) Lhcb6 protein (Lhcb6), light... 0.03 Orthogroups_2024-Update
LOC_Os04g38410 No alias chlorophyll A-B binding protein, putative, expressed 0.07 Orthogroups_2024-Update
Potri.001G210000 No alias light harvesting complex photosystem II subunit 6 0.02 Orthogroups_2024-Update
Pp1s28_315V6 No alias chloroplast light-harvesting complex ii protein 0.07 Orthogroups_2024-Update
Pp1s28_319V6 No alias chloroplast light-harvesting complex ii protein 0.07 Orthogroups_2024-Update
Seita.7G121800.1 No alias component *(LHCb6) of LHC-II complex 0.06 Orthogroups_2024-Update
Sobic.006G264201.1 No alias component *(LHCb6) of LHC-II complex 0.07 Orthogroups_2024-Update
Solyc01g105030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Solyc01g105050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Sopen01g047560 No alias Chlorophyll A-B binding protein 0.06 Orthogroups_2024-Update
Sopen01g047580 No alias Chlorophyll A-B binding protein 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 67 243
No external refs found!