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  5. HORVU2Hr1G081140.18

HORVU2Hr1G081140.18


Description : plastidial RNA splicing factor *(CFM2)


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G081140.18
Cluster HCAA Clusters: Cluster_242

Target Alias Description ECC score Gene Family Method Actions
At3g01370 No alias CRM-domain containing factor CFM2, chloroplastic... 0.04 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.02 Orthogroups_2024-Update
Kfl00095_0160 kfl00095_0160_v1.1 (at3g18390 : 154.0) embryo defective 1865 (EMB1865);... 0.03 Orthogroups_2024-Update
MA_10432072g0010 No alias (at3g23070 : 659.0) Encodes a CRM domain protein CFM3a,... 0.02 Orthogroups_2024-Update
PSME_00022574-RA No alias (at3g18390 : 328.0) embryo defective 1865 (EMB1865);... 0.02 Orthogroups_2024-Update
Seita.2G185900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G127900.1 No alias plastidial RNA splicing factor *(CFM2) 0.02 Orthogroups_2024-Update
Sobic.002G181000.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 625 711
IPR001890 RNA-binding_CRM 426 510
IPR001890 RNA-binding_CRM 116 199
IPR001890 RNA-binding_CRM 926 1012
No external refs found!