At3g01320


Description : Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]


Gene families : OG_42_0000363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g01320
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
440352 No alias SIN3-like 3 0.02 Orthogroups_2024-Update
Bradi2g00860 No alias SIN3-like 4 0.05 Orthogroups_2024-Update
Bradi2g40052 No alias SIN3-like 4 0.07 Orthogroups_2024-Update
Brara.A03931.1 No alias component *(SNL) of histone deacetylase machineries 0.03 Orthogroups_2024-Update
GRMZM2G334457 No alias SIN3-like 4 0.03 Orthogroups_2024-Update
Glyma.01G038300 No alias SIN3-like 4 0.03 Orthogroups_2024-Update
Glyma.02G026700 No alias SIN3-like 4 0.08 Orthogroups_2024-Update
Glyma.08G292900 No alias SIN3-like 3 0.09 Orthogroups_2024-Update
Glyma.13G067800 No alias SIN3-like 2 0.04 Orthogroups_2024-Update
Glyma.18G130400 No alias SIN3-like 4 0.06 Orthogroups_2024-Update
Glyma.19G016300 No alias SIN3-like 2 0.06 Orthogroups_2024-Update
MA_18241g0010 No alias (at1g70060 : 799.0) Encodes a homolog of the... 0.06 Orthogroups_2024-Update
PSME_00032314-RA No alias (at1g70060 : 409.0) Encodes a homolog of the... 0.02 Orthogroups_2024-Update
Pp1s178_148V6 No alias sin3 histone deacetylase complex 0.02 Orthogroups_2024-Update
Seita.5G073400.1 No alias component *(SNL) of histone deacetylase machineries 0.05 Orthogroups_2024-Update
Solyc02g067570 No alias Paired amphipathic helix SIN3-like protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
evm.model.tig00001155.28 No alias (at3g01320 : 124.0) Encodes SIN3-like 1, a homolog of... 0.01 Orthogroups_2024-Update
evm.model.tig00021234.23 No alias (at1g24190 : 93.2) Enhances AtERF7-mediated ... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003822 PAH 74 118
IPR003822 PAH 159 203
IPR003822 PAH 354 397
IPR031693 Sin3_C 1100 1343
IPR013194 HDAC_interact_dom 470 559
No external refs found!