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  5. HORVU2Hr1G088910.1

HORVU2Hr1G088910.1


Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer


Gene families : OG_42_0000927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000927_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G088910.1
Cluster HCAA Clusters: Cluster_271

Target Alias Description ECC score Gene Family Method Actions
A4A49_35047 No alias brca1-associated ring domain protein 1 0.03 Orthogroups_2024-Update
At1g04020 No alias Breast cancer associated RING 1... 0.03 Orthogroups_2024-Update
Brara.I05514.1 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 Orthogroups_2024-Update
GRMZM2G080314 No alias breast cancer susceptibility1 0.02 Orthogroups_2024-Update
HORVU1Hr1G077590.4 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.05 Orthogroups_2024-Update
HORVU2Hr1G088840.1 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.07 Orthogroups_2024-Update
PSME_00025901-RA No alias (at1g63850 : 95.1) BTB/POZ domain-containing protein;... 0.03 Orthogroups_2024-Update
PSME_00045221-RA No alias (at1g04020 : 161.0) Encodes a protein containing two... 0.02 Orthogroups_2024-Update
Potri.002G259000 No alias breast cancer associated RING 1 0.04 Orthogroups_2024-Update
Solyc08g023280 No alias RING/U-box superfamily protein (AHRD V3.3 --* AT3G07200.3) 0.02 Orthogroups_2024-Update
Sopen05g012900 No alias BRCA1 C Terminus (BRCT) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!