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  5. HORVU2Hr1G103520.7

HORVU2Hr1G103520.7


Description : regulatory protein *(NCL) of rRNA transcription


Gene families : OG_42_0002553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G103520.7
Cluster HCAA Clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
234317 No alias nucleolin like 2 0.03 Orthogroups_2024-Update
At1g48920 No alias Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1] 0.03 Orthogroups_2024-Update
Bradi3g14907 No alias nucleolin like 2 0.09 Orthogroups_2024-Update
Brara.E01715.1 No alias regulatory protein *(NCL) of rRNA transcription 0.07 Orthogroups_2024-Update
Brara.E02334.1 No alias regulatory protein *(NCL) of rRNA transcription 0.02 Orthogroups_2024-Update
Brara.F00386.1 No alias regulatory protein *(NCL) of rRNA transcription 0.03 Orthogroups_2024-Update
Brara.H00330.1 No alias regulatory protein *(NCL) of rRNA transcription 0.04 Orthogroups_2024-Update
Cre06.g275100 No alias nucleolin like 2 0.02 Orthogroups_2024-Update
GRMZM2G001850 No alias nucleolin like 2 0.07 Orthogroups_2024-Update
Glyma.11G101500 No alias nucleolin like 2 0.04 Orthogroups_2024-Update
Glyma.12G027400 No alias nucleolin like 2 0.07 Orthogroups_2024-Update
Kfl00563_0110 kfl00563_0110_v1.... (at1g48920 : 147.0) Encodes ATNUC-L1 (NUCLEOLIN LIKE 1),... 0.03 Orthogroups_2024-Update
LOC_Os08g09350 No alias gar2, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00002216-RA No alias (at1g48920 : 154.0) Encodes ATNUC-L1 (NUCLEOLIN LIKE 1),... 0.03 Orthogroups_2024-Update
Potri.005G093100 No alias nucleolin like 2 0.02 Orthogroups_2024-Update
Potri.007G071100 No alias nucleolin like 2 0.06 Orthogroups_2024-Update
Pp1s118_39V6 No alias 28 kda ribonucleoprotein 0.03 Orthogroups_2024-Update
Seita.6G035600.1 No alias regulatory protein *(NCL) of rRNA transcription 0.13 Orthogroups_2024-Update
Seita.9G227300.1 No alias regulatory protein *(NCL) of rRNA transcription 0.12 Orthogroups_2024-Update
Sobic.001G224200.1 No alias regulatory protein *(NCL) of rRNA transcription 0.05 Orthogroups_2024-Update
Sobic.007G069700.1 No alias regulatory protein *(NCL) of rRNA transcription 0.13 Orthogroups_2024-Update
Solyc02g014310 No alias glycine rich protein X55695 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
MF GO:0004834 tryptophan synthase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
CC GO:0008250 oligosaccharyltransferase complex IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016125 sterol metabolic process IEP Predicted GO
BP GO:0016126 sterol biosynthetic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
BP GO:0018196 peptidyl-asparagine modification IEP Predicted GO
BP GO:0018279 protein N-linked glycosylation via asparagine IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 505 572
IPR000504 RRM_dom 619 672
No external refs found!