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  5. HORVU2Hr1G107870.9

HORVU2Hr1G107870.9


Description : chromatin remodeling factor *(Ris1)


Gene families : OG_42_0001683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001683_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G107870.9
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Brara.G01150.1 No alias chromatin remodeling factor *(Ris1) 0.03 Orthogroups_2024-Update
Cre01.g046237 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
Potri.004G037700 No alias SNF2 domain-containing protein / helicase... 0.05 Orthogroups_2024-Update
Potri.007G000700 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 264 682
No external refs found!