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  5. HORVU2Hr1G124480.1

HORVU2Hr1G124480.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU2Hr1G124480.1
Cluster HCAA Clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
131643 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00951.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02152.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04699.1 No alias RNA editing factor *(MEF21) 0.03 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G180600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.06G311600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.11G006200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G102800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G085900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G027440.18 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g10090 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08660 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g39090 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
PSME_00036106-RA No alias (at4g02750 : 199.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Potri.018G071800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.3G224300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G182501.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 47 68
IPR002885 Pentatricopeptide_repeat 72 120
No external refs found!