HORVU3Hr1G012850.1

Description : ATPase component *(CHR11/CHR17) of ISWI chromatin remodeling complexes

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU3Hr1G012850.1
Cluster	HCAA Clusters: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
440815	No alias	chromatin remodeling 5	0.03	Orthogroups_2024-Update
A4A49_34289	No alias	iswi chromatin-remodeling complex atpase chr11	0.03	Orthogroups_2024-Update
A4A49_57939	No alias	iswi chromatin-remodeling complex atpase chr11	0.05	Orthogroups_2024-Update
AC235535.1_FG001	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
Bradi1g10360	No alias	chromatin remodeling 1	0.05	Orthogroups_2024-Update
Bradi2g12950	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
Brara.A03677.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.04	Orthogroups_2024-Update
Kfl00045_0020	kfl00045_0020_v1.1	(at2g25170 : 947.0) Encodes a SWI/SWF nuclear-localized...	0.02	Orthogroups_2024-Update
Kfl00590_0040	kfl00590_0040_v1.1	(at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in...	0.03	Orthogroups_2024-Update
LOC_Os05g05780	No alias	chromatin-remodeling complex ATPase chain, putative, expressed	0.02	Orthogroups_2024-Update
Mp1g18560.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.02	Orthogroups_2024-Update
PSME_00009909-RA	No alias	(at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized...	0.03	Orthogroups_2024-Update
PSME_00015826-RA	No alias	(at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.03	Orthogroups_2024-Update
Potri.003G110100	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Pp1s223_99V6	No alias	chromodomain helicase dna binding protein 5	0.02	Orthogroups_2024-Update
Pp1s293_34V6	No alias	chromodomain helicase dna binding protein 1-like	0.03	Orthogroups_2024-Update
Pp1s317_10V6	No alias	chromodomain-helicase-dna-binding protein	0.03	Orthogroups_2024-Update
Seita.4G050000.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Sobic.002G404700.1	No alias	CHD1-type chromatin remodeling factor *(CHR5) &...	0.03	Orthogroups_2024-Update
Sobic.003G163200.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	Orthogroups_2024-Update
Solyc01g079690	No alias	SWI/SNF2-type chromatin remodelling ATPase	0.02	Orthogroups_2024-Update
Solyc01g090640	No alias	Chromodomain helicase-DNA-binding-like protein (AHRD...	0.03	Orthogroups_2024-Update
Solyc01g090650	No alias	No description available	0.03	Orthogroups_2024-Update
evm.model.contig_2132.9	No alias	(at3g06010 : 612.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.01	Orthogroups_2024-Update
evm.model.tig00020848.66	No alias	(at2g44980 : 201.0) SNF2 domain-containing protein /...	0.05	Orthogroups_2024-Update
evm.model.tig00021275.25	No alias	(q7g8y3\|isw2_orysa : 367.0) Probable chromatin...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	16Dec
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006644	phospholipid metabolic process	IEP	Predicted GO
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Predicted GO
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Predicted GO
BP	GO:0030258	lipid modification	IEP	Predicted GO
BP	GO:0030259	lipid glycosylation	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0046486	glycerolipid metabolic process	IEP	Predicted GO
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	208	475
IPR001650	Helicase_C	498	610
IPR015195	SLIDE	900	1010
IPR015194	ISWI_HAND-dom	760	838

External Links

No external refs found!

HORVU3Hr1G012850.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation