1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. At3g05090

At3g05090


Description : AT3g05090/T12H1_5 [Source:UniProtKB/TrEMBL;Acc:Q93ZS6]


Gene families : OG_42_0002867 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g05090
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
Glyma.03G244500 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G018700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
MA_555156g0010 No alias (at3g05090 : 356.0) Encodes a DCAF protein. Mutants are... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 34 67
IPR001680 WD40_repeat 210 241
IPR001680 WD40_repeat 76 111
IPR001680 WD40_repeat 116 155
IPR001680 WD40_repeat 248 283
IPR001680 WD40_repeat 288 323
IPR021772 DUF3337 606 748
No external refs found!