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  5. HORVU3Hr1G052280.1

HORVU3Hr1G052280.1


Description : Unknown function


Gene families : OG_42_0004912 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004912_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G052280.1
Cluster HCAA Clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Bradi2g42630 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G235800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.06G128900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
LOC_Os11g24570 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.012G015400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G254800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G208300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.009G210100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
BP GO:0006772 thiamine metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009228 thiamine biosynthetic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042723 thiamine-containing compound metabolic process IEP Predicted GO
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 124 175
IPR002885 Pentatricopeptide_repeat 313 338
IPR002885 Pentatricopeptide_repeat 455 502
IPR002885 Pentatricopeptide_repeat 385 433
IPR002885 Pentatricopeptide_repeat 243 266
IPR002885 Pentatricopeptide_repeat 276 305
IPR002885 Pentatricopeptide_repeat 354 383
IPR002885 Pentatricopeptide_repeat 203 232
No external refs found!