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  5. HORVU3Hr1G061950.1

HORVU3Hr1G061950.1


Description : plastidial mRNA processing factor *(SOT5)


Gene families : OG_42_0004203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004203_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G061950.1
Cluster HCAA Clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Potri.001G459900 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 572 620
IPR002885 Pentatricopeptide_repeat 714 759
IPR002885 Pentatricopeptide_repeat 795 824
IPR002885 Pentatricopeptide_repeat 492 518
IPR002885 Pentatricopeptide_repeat 648 676
No external refs found!