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  5. HORVU3Hr1G064590.1

HORVU3Hr1G064590.1


Description : RAV/NGATHA-type transcription factor


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G064590.1
Cluster HCAA Clusters: Cluster_279

Target Alias Description ECC score Gene Family Method Actions
HORVU3Hr1G010100.2 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
HORVU5Hr1G040620.2 No alias RAV/NGATHA-type transcription factor 0.05 Orthogroups_2024-Update
LOC_Os01g04750 No alias B3 DNA binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_246350g0010 No alias (at1g13260 : 168.0) Encodes an AP2/B3 domain... 0.03 Orthogroups_2024-Update
PSME_00048986-RA No alias (at1g25560 : 246.0) Encodes a member of the RAV... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005758 mitochondrial intermembrane space IEP Predicted GO
MF GO:0016530 metallochaperone activity IEP Predicted GO
MF GO:0016531 copper chaperone activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
CC GO:0031970 organelle envelope lumen IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 17 109
No external refs found!