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  5. At3g06390

At3g06390


Description : CASP-like protein 1D2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQU2]


Gene families : OG_42_0000213 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000213_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g06390
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
A4A49_03550 No alias casparian strip membrane protein 1 0.03 Orthogroups_2024-Update
At3g11550 No alias Casparian strip membrane protein 2... 0.03 Orthogroups_2024-Update
Brara.F03733.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I00232.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.02G201200 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Glyma.07G251200 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Glyma.17G023000 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
LOC_Os04g58760 No alias membrane associated DUF588 domain containing protein,... 0.02 Orthogroups_2024-Update
Potri.016G075300 No alias Uncharacterised protein family (UPF0497) 0.03 Orthogroups_2024-Update
Seita.3G084500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR006702 CASP_dom 34 184
No external refs found!