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  5. At3g06400

At3g06400


Description : Chromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:F4JAV9]


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g06400
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Orthogroups_2024-Update
440815 No alias chromatin remodeling 5 0.02 Orthogroups_2024-Update
A4A49_03849 No alias protein chromatin remodeling 4 0.04 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.04 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.08 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
Bradi1g78440 No alias SNF2 domain-containing protein / helicase... 0.04 Orthogroups_2024-Update
Bradi2g12950 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Cre08.g377200 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Cre12.g508150 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Cre12.g537671 No alias chromatin remodeling 4 0.04 Orthogroups_2024-Update
GRMZM2G010342 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
GRMZM2G467799 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
Glyma.04G062400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.08 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.06 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.08 Orthogroups_2024-Update
Glyma.07G252100 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Glyma.08G086100 No alias chromatin remodeling 4 0.05 Orthogroups_2024-Update
Glyma.11G004100 No alias Homeotic gene regulator 0.04 Orthogroups_2024-Update
Glyma.13G215900 No alias chromatin-remodeling protein 11 0.03 Orthogroups_2024-Update
Glyma.14G033600 No alias chromatin remodeling 5 0.05 Orthogroups_2024-Update
Glyma.15G097000 No alias chromatin remodeling factor17 0.06 Orthogroups_2024-Update
Glyma.17G022300 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Orthogroups_2024-Update
HORVU1Hr1G019290.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU7Hr1G041450.33 No alias SMARCA component *(SYD/BRM/MINU) 0.04 Orthogroups_2024-Update
Kfl00590_0040 kfl00590_0040_v1.1 (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... 0.03 Orthogroups_2024-Update
LOC_Os03g01200 No alias SNF2 family N-terminal domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g08480 No alias CHD3-type chromatin-remodeling factor PICKLE, putative, expressed 0.03 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.04 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Orthogroups_2024-Update
Mp3g15030.1 No alias chromatin remodeling factor (Iswi) 0.02 Orthogroups_2024-Update
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.02 Orthogroups_2024-Update
PSME_00009909-RA No alias (at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized... 0.03 Orthogroups_2024-Update
PSME_00015826-RA No alias (at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.02 Orthogroups_2024-Update
Potri.008G205600 No alias chromatin remodeling factor17 0.04 Orthogroups_2024-Update
Pp1s291_20V6 No alias chromodomain-helicase-dna-binding protein 0.02 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.04 Orthogroups_2024-Update
Seita.2G419600.1 No alias component *(CHR5) of SAGA transcription co-activator... 0.04 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.05 Orthogroups_2024-Update
Seita.4G050000.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.04 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.04 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 Orthogroups_2024-Update
Sobic.010G065300.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.04 Orthogroups_2024-Update
Sopen02g017710 No alias SNF2 family N-terminal domain 0.04 Orthogroups_2024-Update
evm.model.contig_2077.13 No alias (at2g13370 : 595.0) chromatin remodeling 5 (CHR5);... 0.02 Orthogroups_2024-Update
evm.model.tig00000217.24 No alias (at2g28290 : 140.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00000217.25 No alias (at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00000802.67 No alias (at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type... 0.03 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006338 chromatin remodeling IEA InterProScan predictions
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA InterProScan predictions
MF GO:0031491 nucleosome binding IEA InterProScan predictions
BP GO:0043044 ATP-dependent chromatin remodeling IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005801 cis-Golgi network IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR015195 SLIDE 897 1007
IPR000330 SNF2_N 202 469
IPR001650 Helicase_C 492 604
IPR015194 ISWI_HAND-dom 754 832
No external refs found!