- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Unknown function
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Hordeum vulgare: HORVU3Hr1G080120.11 | |
| Cluster | HCAA Clusters: Cluster_117 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 109721 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| At1g15510 | No alias | Pentatricopeptide repeat-containing protein At1g15510,... | 0.03 | Orthogroups_2024-Update | |
| At5g66520 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.03 | Orthogroups_2024-Update | |
| Bradi2g62320 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g62740 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi5g13537 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.E01438.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.F00415.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G03498.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G047290.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G105080.1 | No alias | RNA editing factor *(OTP85) | 0.03 | Orthogroups_2024-Update | |
| LOC_Os04g43430 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g28830 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os09g24680 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_25584g0010 | No alias | (at4g18750 : 529.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00001719-RA | No alias | (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00002640-RA | No alias | (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00017551-RA | No alias | (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
| PSME_00035796-RA | No alias | (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
| PSME_00037812-RA | No alias | (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00056153-RA | No alias | (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| Potri.005G215500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s15_448V6 | No alias | MZB10.7; pentatricopeptide (PPR) repeat-containing... | 0.03 | Orthogroups_2024-Update | |
| Pp1s208_104V6 | No alias | K23L20.13; expressed protein [Arabidopsis thaliana] | 0.02 | Orthogroups_2024-Update | |
| Pp1s73_226V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
| Seita.1G205700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.1G290500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.2G031700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.2G047600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.4G225800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.5G468800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc01g098150 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc02g065030 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
| Solyc02g094480 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc03g116840 | No alias | BED zinc finger,hAT family dimerization domain (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Solyc10g007940 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Solyc10g008570 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Sopen02g024180 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen09g031050 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen11g017250 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| evm.model.contig_2025.47 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update | |
| evm.model.tig00001038.5 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Predicted GO |
| MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006813 | potassium ion transport | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| BP | GO:0030488 | tRNA methylation | IEP | Predicted GO |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| CC | GO:0034708 | methyltransferase complex | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0071805 | potassium ion transmembrane transport | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 472 | 495 |
| IPR002885 | Pentatricopeptide_repeat | 239 | 266 |
| IPR002885 | Pentatricopeptide_repeat | 267 | 291 |
| IPR002885 | Pentatricopeptide_repeat | 66 | 94 |
| IPR002885 | Pentatricopeptide_repeat | 400 | 429 |
| IPR002885 | Pentatricopeptide_repeat | 370 | 396 |
| IPR002885 | Pentatricopeptide_repeat | 163 | 210 |
| IPR002885 | Pentatricopeptide_repeat | 295 | 343 |
| No external refs found! |