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  5. HORVU3Hr1G087140.16

HORVU3Hr1G087140.16


Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex


Gene families : OG_42_0004561 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004561_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G087140.16
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
At2g39340 No alias SAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8] 0.03 Orthogroups_2024-Update
Bradi2g23017 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.04 Orthogroups_2024-Update
Bradi2g54290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Orthogroups_2024-Update
Potri.008G047700 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 900 1109
No external refs found!