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  5. HORVU3Hr1G087540.1

HORVU3Hr1G087540.1


Description : plastidial splicing factor *(PDM3)


Gene families : OG_42_0008364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008364_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G087540.1
Cluster HCAA Clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Seita.5G369700.1 No alias plastidial splicing factor *(PDM3) 0.03 Orthogroups_2024-Update
Sopen02g032330 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 345 391
IPR002885 Pentatricopeptide_repeat 421 465
IPR002885 Pentatricopeptide_repeat 602 626
IPR002885 Pentatricopeptide_repeat 565 590
IPR033443 PPR_long 198 289
No external refs found!