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  5. HORVU3Hr1G094730.2

HORVU3Hr1G094730.2


Description : SBP-type transcription factor


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU3Hr1G094730.2
Cluster HCAA Clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
Cre01.g043550 No alias squamosa promoter binding protein-like 10 0.02 Orthogroups_2024-Update
Cre17.g698233 No alias squamosa promoter binding protein-like 2 0.02 Orthogroups_2024-Update
GRMZM2G101499 No alias squamosa promoter binding protein-like 8 0.03 Orthogroups_2024-Update
Glyma.09G113800 No alias squamosa promoter binding protein-like 9 0.04 Orthogroups_2024-Update
HORVU6Hr1G031450.6 No alias SBP-type transcription factor 0.03 Orthogroups_2024-Update
Sopen07g027780 No alias SBP domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 97 170
No external refs found!