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At3g07820


Description : Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SFD2]


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g07820
Cluster HCCA clusters: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
Brara.C02225.1 No alias pectin lyase & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.F03031.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.4G218200.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.4G218300.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.5G182200.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
Seita.9G141800.1 No alias EC_3.2 glycosylase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 47 374
No external refs found!