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At3g07840


Description : Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SFD0]


Gene families : OG_42_0000512 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000512_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g07840
Cluster HCCA clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
A4A49_10908 No alias polygalacturonase 0.04 Orthogroups_2024-Update
At1g17150 No alias Pectin lyase-like superfamily protein... 0.03 Orthogroups_2024-Update
At1g43080 No alias Glycoside hydrolase family 28 protein... 0.04 Orthogroups_2024-Update
At3g07830 No alias Pectin lyase-like superfamily protein... 0.05 Orthogroups_2024-Update
At4g18180 No alias Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G18180] 0.04 Orthogroups_2024-Update
Brara.D02006.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
GRMZM2G027782 No alias glycoside hydrolase family 28 protein /... 0.02 Orthogroups_2024-Update
GRMZM2G160626 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G157600 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.001G377700 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Sopen07g023430 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0006955 immune response IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0045087 innate immune response IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 48 375
No external refs found!