- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : E3 ubiquitin ligase *(HUB)
Gene families : OG_42_0001988 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001988_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Hordeum vulgare: HORVU3Hr1G099950.5 | |
| Cluster | HCAA Clusters: Cluster_226 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi4g25177 | No alias | histone mono-ubiquitination 1 | 0.04 | Orthogroups_2024-Update | |
| Glyma.02G267300 | No alias | histone mono-ubiquitination 2 | 0.04 | Orthogroups_2024-Update | |
| PSME_00035064-RA | No alias | (at1g55250 : 200.0) Encodes one of two orthologous E3... | 0.05 | Orthogroups_2024-Update | |
| Seita.4G189800.1 | No alias | E3 ubiquitin ligase *(HUB) | 0.06 | Orthogroups_2024-Update | |
| Seita.9G367100.1 | No alias | E3 ubiquitin ligase *(HUB) | 0.05 | Orthogroups_2024-Update | |
| Solyc11g013370 | No alias | E3 ubiquitin-protein ligase BRE1-like 1 (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| evm.model.tig00000169.18 | No alias | (at1g55250 : 113.0) Encodes one of two orthologous E3... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000123 | histone acetyltransferase complex | IEP | Predicted GO |
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | Predicted GO |
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| MF | GO:0004559 | alpha-mannosidase activity | IEP | Predicted GO |
| MF | GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | IEP | Predicted GO |
| MF | GO:0005515 | protein binding | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
| CC | GO:0005694 | chromosome | IEP | Predicted GO |
| BP | GO:0006397 | mRNA processing | IEP | Predicted GO |
| BP | GO:0006473 | protein acetylation | IEP | Predicted GO |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Predicted GO |
| BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015693 | magnesium ion transport | IEP | Predicted GO |
| MF | GO:0015923 | mannosidase activity | IEP | Predicted GO |
| MF | GO:0015924 | mannosyl-oligosaccharide mannosidase activity | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| BP | GO:0016556 | mRNA modification | IEP | Predicted GO |
| BP | GO:0016573 | histone acetylation | IEP | Predicted GO |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Predicted GO |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Predicted GO |
| CC | GO:0031248 | protein acetyltransferase complex | IEP | Predicted GO |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043484 | regulation of RNA splicing | IEP | Predicted GO |
| BP | GO:0043543 | protein acylation | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044451 | nucleoplasm part | IEP | Predicted GO |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | Predicted GO |
| BP | GO:0050684 | regulation of mRNA processing | IEP | Predicted GO |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Predicted GO |
| MF | GO:0061666 | UFM1 ligase activity | IEP | Predicted GO |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
| BP | GO:0070838 | divalent metal ion transport | IEP | Predicted GO |
| MF | GO:0071568 | UFM1 transferase activity | IEP | Predicted GO |
| BP | GO:0071569 | protein ufmylation | IEP | Predicted GO |
| BP | GO:0072511 | divalent inorganic cation transport | IEP | Predicted GO |
| BP | GO:0080009 | mRNA methylation | IEP | Predicted GO |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
| CC | GO:1902493 | acetyltransferase complex | IEP | Predicted GO |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |