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  5. Solyc01g017240

Solyc01g017240


Description : Ycf1 protein (AHRD V3.3 *-* ATCG01130.1)


Gene families : OG_42_0004853 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004853_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g017240
Cluster HCCA clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
Potri.013G075200 No alias Ycf1 protein 0.03 Orthogroups_2024-Update
Solyc11g021310 No alias Ycf1 (AHRD V3.3 *-* A0A0U1ZKJ5_SOLPI) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR008896 TIC214 1 118
No external refs found!