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Description : RNA editing factor *(OTP72)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Hordeum vulgare: HORVU3Hr1G110410.2 | |
| Cluster | HCAA Clusters: Cluster_240 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 182822 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
| At1g56570 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
| At5g59200 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.05 | Orthogroups_2024-Update | |
| Bradi2g13297 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Bradi3g37120 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Brara.C03290.1 | No alias | RNA editing factor *(MEF12) | 0.03 | Orthogroups_2024-Update | |
| Brara.D01648.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.E02154.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.H03084.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G177715 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G250600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G332400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.15G016600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.16G206000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU2Hr1G053030.5 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Potri.004G047800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s186_64V6 | No alias | hypothetical protein [Oryza sativa (japonica cultivar-group)] | 0.02 | Orthogroups_2024-Update | |
| Sobic.007G201400.1 | No alias | RNA editing factor *(DOT4) | 0.05 | Orthogroups_2024-Update | |
| Sopen03g034780 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen07g003070 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | 16Dec |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 719 | 796 |
| IPR002885 | Pentatricopeptide_repeat | 256 | 277 |
| IPR002885 | Pentatricopeptide_repeat | 79 | 103 |
| IPR002885 | Pentatricopeptide_repeat | 153 | 173 |
| IPR002885 | Pentatricopeptide_repeat | 181 | 211 |
| IPR002885 | Pentatricopeptide_repeat | 281 | 334 |
| IPR002885 | Pentatricopeptide_repeat | 389 | 436 |
| IPR002885 | Pentatricopeptide_repeat | 490 | 537 |
| No external refs found! |