HORVU3Hr1G115820.3

Description : component *(eS28) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU3Hr1G115820.3
Cluster	HCAA Clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
170205	No alias	Nucleic acid-binding, OB-fold-like protein	0.04	Orthogroups_2024-Update
At3g10090	No alias	40S ribosomal protein S28-1...	0.03	Orthogroups_2024-Update
At5g03850	No alias	40S ribosomal protein S28-1...	0.05	Orthogroups_2024-Update
At5g64140	No alias	RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91]	0.07	Orthogroups_2024-Update
Bradi3g00500	No alias	Nucleic acid-binding, OB-fold-like protein	0.07	Orthogroups_2024-Update
Bradi4g13890	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	Orthogroups_2024-Update
Brara.B00115.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.C00134.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.F02295.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Cre12.g510450	No alias	Nucleic acid-binding, OB-fold-like protein	0.09	Orthogroups_2024-Update
GRMZM2G124143	No alias	Nucleic acid-binding, OB-fold-like protein	0.08	Orthogroups_2024-Update
GRMZM2G455828	No alias	Nucleic acid-binding, OB-fold-like protein	0.1	Orthogroups_2024-Update
Kfl00237_0050	kfl00237_0050_v1.1	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Potri.008G013200	No alias	ribosomal protein S28	0.08	Orthogroups_2024-Update
Pp1s21_362V6	No alias	40s ribosomal protein s28	0.14	Orthogroups_2024-Update
Pp1s279_27V6	No alias	40s ribosomal protein s28	0.1	Orthogroups_2024-Update
Pp1s313_15V6	No alias	40s ribosomal protein s28	0.06	Orthogroups_2024-Update
Pp1s34_107V6	No alias	40s ribosomal protein s28	0.06	Orthogroups_2024-Update
Sobic.001G402050.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.1	Orthogroups_2024-Update
Sobic.001G493001.1	No alias	component *(eS28) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Solyc02g021400	No alias	40S ribosomal protein S28 (AHRD V3.3 - W9SEX7_9ROSA)	0.05	Orthogroups_2024-Update
Solyc10g078630	No alias	40S ribosomal protein S28 (AHRD V3.3 - W9SEX7_9ROSA)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Predicted GO
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predicted GO
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006260	DNA replication	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006528	asparagine metabolic process	IEP	Predicted GO
BP	GO:0006529	asparagine biosynthetic process	IEP	Predicted GO
BP	GO:0006801	superoxide metabolic process	IEP	Predicted GO
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Predicted GO
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predicted GO
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predicted GO
CC	GO:0017053	transcriptional repressor complex	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Predicted GO
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000289	Ribosomal_S28e	10	70

External Links

No external refs found!

HORVU3Hr1G115820.3

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation