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  5. HORVU4Hr1G001170.5

HORVU4Hr1G001170.5


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G001170.5
Cluster HCAA Clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
A4A49_20717 No alias ubiquitin-40s ribosomal protein s27a 0.02 Orthogroups_2024-Update
At2g35635 No alias UBQ7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL95] 0.04 Orthogroups_2024-Update
At2g36170 No alias Ubiquitin-60S ribosomal protein L40-1... 0.03 Orthogroups_2024-Update
Bradi1g68940 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.06 Orthogroups_2024-Update
Bradi2g34750 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Orthogroups_2024-Update
Bradi4g10327 No alias polyubiquitin 10 0.07 Orthogroups_2024-Update
Bradi4g38540 No alias ubiquitin extension protein 1 0.03 Orthogroups_2024-Update
Brara.C01815.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Brara.C02349.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Brara.D00067.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.E00858.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.E00859.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.G00981.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.G01965.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.I03230.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.I03566.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I04302.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Cre01.g007051 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.06 Orthogroups_2024-Update
Cre06.g273600 No alias Ribosomal protein S27a / Ubiquitin family protein 0.11 Orthogroups_2024-Update
GRMZM2G006293 No alias Ribosomal protein S27a / Ubiquitin family protein 0.08 Orthogroups_2024-Update
GRMZM2G047732 No alias Ribosomal protein S27a / Ubiquitin family protein 0.07 Orthogroups_2024-Update
Glyma.01G029200 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 Orthogroups_2024-Update
Glyma.02G036000 No alias Ribosomal protein S27a / Ubiquitin family protein 0.07 Orthogroups_2024-Update
Glyma.04G231500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.03 Orthogroups_2024-Update
Glyma.09G023700 No alias Ribosomal protein S27a / Ubiquitin family protein 0.07 Orthogroups_2024-Update
Glyma.15G129800 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Orthogroups_2024-Update
Glyma.19G195500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.08 Orthogroups_2024-Update
Kfl00144_0120 kfl00144_0120_v1.... (at3g62250 : 249.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.04 Orthogroups_2024-Update
LOC_Os05g06770 No alias 40S ribosomal protein S27a, putative, expressed 0.03 Orthogroups_2024-Update
MA_10435699g0020 No alias (at2g47110 : 231.0) polyubiquitin gene; ubiquitin 6... 0.03 Orthogroups_2024-Update
MA_529552g0010 No alias (at3g62250 : 229.0) ubiquitin 5 (UBQ5); FUNCTIONS IN:... 0.03 Orthogroups_2024-Update
Mp7g12760.1 No alias component RPS27a of SSU proteome 0.02 Orthogroups_2024-Update
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.02 Orthogroups_2024-Update
Potri.012G024300 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.05 Orthogroups_2024-Update
Potri.016G077200 No alias ubiquitin extension protein 1 0.02 Orthogroups_2024-Update
Pp1s13_40V6 No alias ubiquitin extension protein 0.05 Orthogroups_2024-Update
Pp1s184_64V6 No alias ubiquitin extension protein 0.05 Orthogroups_2024-Update
Pp1s241_60V6 No alias ubiquitin fusion protein 0.03 Orthogroups_2024-Update
Pp1s268_35V6 No alias ubiquitin fusion protein 0.03 Orthogroups_2024-Update
Pp1s333_9V6 No alias ubiquitin fusion protein 0.05 Orthogroups_2024-Update
Pp1s56_39V6 No alias ubiquitin extension protein 0.06 Orthogroups_2024-Update
Pp1s56_52V6 No alias ubiquitin extension protein 0.06 Orthogroups_2024-Update
Seita.2G133700.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Seita.5G156000.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Seita.7G270700.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Seita.9G478400.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Sobic.001G444800.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.002G135200.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.002G178700.2 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.003G152600.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Sobic.009G054800.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Solyc01g056940 No alias Ubiquitin 0.09 Orthogroups_2024-Update
Solyc01g096290 No alias ubiquitin-ribosomal fusion protein 0.08 Orthogroups_2024-Update
Solyc03g082570 No alias ubiquitin-ribosomal fusion protein 0.07 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.05 Orthogroups_2024-Update
Solyc08g083120 No alias ubiquitin-ribosomal fusion protein 0.03 Orthogroups_2024-Update
Solyc12g098940 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.11 Orthogroups_2024-Update
Solyc12g099030 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.07 Orthogroups_2024-Update
Sopen01g029970 No alias Ubiquitin family 0.11 Orthogroups_2024-Update
Sopen01g040060 No alias Ubiquitin family 0.07 Orthogroups_2024-Update
Sopen03g022330 No alias Ubiquitin family 0.1 Orthogroups_2024-Update
Sopen08g004410 No alias Ubiquitin family 0.14 Orthogroups_2024-Update
Sopen08g031340 No alias Ubiquitin family 0.1 Orthogroups_2024-Update
Sopen12g033690 No alias Ubiquitin family 0.03 Orthogroups_2024-Update
Sopen12g033760 No alias Ubiquitin family 0.05 Orthogroups_2024-Update
evm.model.contig_2055.11 No alias (at3g52590 : 241.0) Ubiquitin extension protein;... 0.09 Orthogroups_2024-Update
evm.model.contig_3445.1 No alias no hits & (original description: no original description) 0.13 Orthogroups_2024-Update
evm.model.tig00022075.50 No alias (at3g52590 : 236.0) Ubiquitin extension protein;... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004055 argininosuccinate synthase activity IEP Predicted GO
MF GO:0004146 dihydrofolate reductase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006525 arginine metabolic process IEP Predicted GO
BP GO:0006526 arginine biosynthetic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006732 coenzyme metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Predicted GO
BP GO:0018199 peptidyl-glutamine modification IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046653 tetrahydrofolate metabolic process IEP Predicted GO
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 98
IPR000626 Ubiquitin_dom 3 74
No external refs found!