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Description : component *(eS25) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0001610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001610_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Hordeum vulgare: HORVU4Hr1G001220.3 | |
| Cluster | HCAA Clusters: Cluster_145 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 172404 | No alias | Ribosomal protein S25 family protein | 0.12 | Orthogroups_2024-Update | |
| At2g21580 | No alias | 40S ribosomal protein S25-2... | 0.03 | Orthogroups_2024-Update | |
| Bradi3g42900 | No alias | Ribosomal protein S25 family protein | 0.15 | Orthogroups_2024-Update | |
| Bradi4g38580 | No alias | Ribosomal protein S25 family protein | 0.14 | Orthogroups_2024-Update | |
| Brara.A00031.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.09 | Orthogroups_2024-Update | |
| Brara.C04140.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Brara.D01272.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Brara.F03876.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Brara.H01813.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Brara.I04632.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Cre08.g382500 | No alias | Ribosomal protein S25 family protein | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G057608 | No alias | Ribosomal protein S25 family protein | 0.07 | Orthogroups_2024-Update | |
| GRMZM2G084868 | No alias | Function unknown | 0.08 | Orthogroups_2024-Update | |
| GRMZM2G139349 | No alias | Ribosomal protein S25 family protein | 0.07 | Orthogroups_2024-Update | |
| Glyma.04G011100 | No alias | Ribosomal protein S25 family protein | 0.15 | Orthogroups_2024-Update | |
| Glyma.06G011000 | No alias | Ribosomal protein S25 family protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.11G115400 | No alias | Ribosomal protein S25 family protein | 0.12 | Orthogroups_2024-Update | |
| Glyma.12G041300 | No alias | Ribosomal protein S25 family protein | 0.07 | Orthogroups_2024-Update | |
| Kfl00347_0040 | kfl00347_0040_v1.1 | (at4g39200 : 89.0) Ribosomal protein S25 family protein;... | 0.04 | Orthogroups_2024-Update | |
| LOC_Os09g39540 | No alias | 40S ribosomal protein S25, putative, expressed | 0.04 | Orthogroups_2024-Update | |
| MA_104137g0010 | No alias | (at2g21580 : 130.0) Ribosomal protein S25 family... | 0.03 | Orthogroups_2024-Update | |
| Mp4g06120.1 | No alias | component RPS25 of SSU proteome | 0.05 | Orthogroups_2024-Update | |
| PSME_00018601-RA | No alias | (at2g21580 : 128.0) Ribosomal protein S25 family... | 0.1 | Orthogroups_2024-Update | |
| Potri.004G157200 | No alias | Ribosomal protein S25 family protein | 0.1 | Orthogroups_2024-Update | |
| Potri.009G118900 | No alias | Ribosomal protein S25 family protein | 0.06 | Orthogroups_2024-Update | |
| Pp1s21_4V6 | No alias | 40s ribosomal protein | 0.12 | Orthogroups_2024-Update | |
| Pp1s26_213V6 | No alias | 40s ribosomal protein | 0.11 | Orthogroups_2024-Update | |
| Pp1s30_212V6 | No alias | 40s ribosomal protein | 0.03 | Orthogroups_2024-Update | |
| Pp1s36_84V6 | No alias | 40s ribosomal protein | 0.1 | Orthogroups_2024-Update | |
| Seita.2G134200.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
| Seita.6G248800.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
| Sobic.003G322400.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.11 | Orthogroups_2024-Update | |
| Sobic.003G322532.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Sobic.003G338966.1 | No alias | component *(eS25) of small ribosomal-subunit (SSU) proteome | 0.21 | Orthogroups_2024-Update | |
| Solyc02g069850 | No alias | ribosomal protein S25 | 0.18 | Orthogroups_2024-Update | |
| Solyc10g052660 | No alias | ribosomal protein S25 | 0.11 | Orthogroups_2024-Update | |
| Sopen01g012450 | No alias | S25 ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Sopen02g019010 | No alias | S25 ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Sopen06g020450 | No alias | S25 ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Sopen10g017830 | No alias | S25 ribosomal protein | 0.16 | Orthogroups_2024-Update | |
| Sopen10g023380 | No alias | S25 ribosomal protein | 0.2 | Orthogroups_2024-Update | |
| evm.model.contig_2033.4 | No alias | (at4g34555 : 106.0) Ribosomal protein S25 family... | 0.2 | Orthogroups_2024-Update | |
| evm.model.tig00000037.5 | No alias | (at4g39200 : 85.1) Ribosomal protein S25 family protein;... | 0.08 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003729 | mRNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Predicted GO |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| CC | GO:0008250 | oligosaccharyltransferase complex | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| CC | GO:0016272 | prefoldin complex | IEP | Predicted GO |
| MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Predicted GO |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Predicted GO |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044422 | organelle part | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044428 | nuclear part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR004977 | Ribosomal_S25 | 6 | 105 |
| No external refs found! |