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  5. HORVU4Hr1G002250.1

HORVU4Hr1G002250.1


Description : FRS/FRF-type transcription factor


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G002250.1
Cluster HCAA Clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G019300 No alias FAR1-related sequence 6 0.03 Orthogroups_2024-Update
Glyma.15G032800 No alias FAR1-related sequence 4 0.03 Orthogroups_2024-Update
HORVU5Hr1G044340.2 No alias FRS/FRF-type transcription factor 0.04 Orthogroups_2024-Update
Potri.004G209100 No alias FAR1-related sequence 9 0.03 Orthogroups_2024-Update
Solyc07g045520 No alias FAR1-related sequence 10 (AHRD V3.3 *** AT5G28530.3) 0.03 Orthogroups_2024-Update
Sopen07g004620 No alias MULE transposase domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
CC GO:0005795 Golgi stack IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031984 organelle subcompartment IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
CC GO:0098791 Golgi subcompartment IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 672 701
IPR004330 FAR1_DNA_bnd_dom 158 262
IPR018289 MULE_transposase_dom 387 478
No external refs found!