HORVU4Hr1G008610.1


Description : phytochrome photoreceptor *(PHY)


Gene families : OG_42_0001032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001032_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G008610.1
Cluster HCAA Clusters: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
At2g18790 No alias Phytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4] 0.03 Orthogroups_2024-Update
Pp1s327_27V6 No alias phy2 gene for phytochrome protein PHY2 0.03 Orthogroups_2024-Update
Seita.9G089700.1 No alias phytochrome photoreceptor *(PHY) 0.03 Orthogroups_2024-Update
evm.model.tig00000361.33 No alias (at5g35840 : 136.0) Encodes the apoprotein of... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
BP GO:0007165 signal transduction IEA 16Dec
BP GO:0009584 detection of visible light IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0009108 coenzyme biosynthetic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003594 HATPase_C 1010 1120
IPR003018 GAF 219 402
IPR013654 PAS_2 69 185
IPR013515 Phytochrome_cen-reg 417 589
IPR013767 PAS_fold 752 874
IPR013767 PAS_fold 622 736
IPR003661 HisK_dim/P 900 952
No external refs found!