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  5. At3g09680

At3g09680


Description : 40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]


Gene families : OG_42_0001537 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g09680
Cluster HCCA clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
145246 No alias Ribosomal protein S12/S23 family protein 0.04 Orthogroups_2024-Update
A4A49_59751 No alias 40s ribosomal protein s23 0.03 Orthogroups_2024-Update
Bradi2g22897 No alias Ribosomal protein S12/S23 family protein 0.04 Orthogroups_2024-Update
Bradi2g54210 No alias Ribosomal protein S12/S23 family protein 0.04 Orthogroups_2024-Update
Brara.A03520.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.C00091.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Brara.C03262.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.J02847.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre12.g504200 No alias Ribosomal protein S12/S23 family protein 0.08 Orthogroups_2024-Update
Glyma.10G049400 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
Glyma.13G137100 No alias Ribosomal protein S12/S23 family protein 0.06 Orthogroups_2024-Update
HORVU1Hr1G071570.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
HORVU3Hr1G087380.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Kfl00077_0130 kfl00077_0130_v1.1 (p46297|rs23_fraan : 274.0) 40S ribosomal protein S23... 0.05 Orthogroups_2024-Update
MA_10436470g0020 No alias (p46297|rs23_fraan : 282.0) 40S ribosomal protein S23... 0.07 Orthogroups_2024-Update
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.05 Orthogroups_2024-Update
PSME_00017761-RA No alias (p46297|rs23_fraan : 278.0) 40S ribosomal protein S23... 0.1 Orthogroups_2024-Update
Potri.016G085800 No alias Ribosomal protein S12/S23 family protein 0.03 Orthogroups_2024-Update
Pp1s135_33V6 No alias 40s ribosomal protein s23 0.05 Orthogroups_2024-Update
Pp1s287_20V6 No alias 40s ribosomal protein s23 0.11 Orthogroups_2024-Update
Pp1s372_2V6 No alias 40s ribosomal protein s23 0.02 Orthogroups_2024-Update
Pp1s61_268V6 No alias 40s ribosomal protein s23 0.09 Orthogroups_2024-Update
Seita.3G213400.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Seita.5G371300.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Seita.9G035900.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.003G346600.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.009G166500.1 No alias component *(uS12) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Solyc09g007350 No alias Ribosomal protein S12 (AHRD V3.3 *** A0A059LPB2_9CHLO) 0.03 Orthogroups_2024-Update
Solyc10g086020 No alias interactor of constitutive active ROPs 3 0.06 Orthogroups_2024-Update
Sopen09g002250 No alias Ribosomal protein S12/S23 0.08 Orthogroups_2024-Update
Sopen10g033750 No alias Ribosomal protein S12/S23 0.04 Orthogroups_2024-Update
Sopen10g035390 No alias Ribosomal protein S12/S23 0.06 Orthogroups_2024-Update
evm.model.contig_4434.4 No alias (p46297|rs23_fraan : 218.0) 40S ribosomal protein S23... 0.06 Orthogroups_2024-Update
evm.model.tig00001264.27 No alias (at5g02960 : 160.0) Ribosomal protein S12/S23 family... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
CC GO:0008274 gamma-tubulin ring complex IEP Predicted GO
MF GO:0008430 selenium binding IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 32 141
No external refs found!