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  5. HORVU4Hr1G009440.3

HORVU4Hr1G009440.3


Description : bHLH-type transcription factor


Gene families : OG_42_0000780 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000780_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G009440.3
Cluster HCAA Clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
A4A49_29043 No alias transcription factor bhlh25 0.03 Orthogroups_2024-Update
At2g22760 No alias Uncharacterized protein At2g22760 (Fragment)... 0.03 Orthogroups_2024-Update
Bradi1g12760 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G198100 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G117600 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G063900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G215400 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G368700 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Seita.3G401700.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G089000.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 164 211
No external refs found!