Description : component *(uL3) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0002422 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002422_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Hordeum vulgare: HORVU4Hr1G019980.1 | |
Cluster | HCAA Clusters: Cluster_40 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
270706 | No alias | ribosomal protein 1 | 0.19 | Orthogroups_2024-Update | |
Bradi4g24610 | No alias | ribosomal protein 1 | 0.17 | Orthogroups_2024-Update | |
Bradi4g41680 | No alias | ribosomal protein 1 | 0.13 | Orthogroups_2024-Update | |
Brara.B02465.1 | No alias | component *(uL3) of large ribosomal-subunit (LSU) proteome | 0.21 | Orthogroups_2024-Update | |
Brara.I01735.1 | No alias | component *(uL3) of large ribosomal-subunit (LSU) proteome | 0.25 | Orthogroups_2024-Update | |
Glyma.20G168100 | No alias | ribosomal protein 1 | 0.09 | Orthogroups_2024-Update | |
Kfl01033_0020 | kfl01033_0020_v1.1 | (at1g61580 : 584.0) R-protein L3 B (RPL3B); FUNCTIONS... | 0.1 | Orthogroups_2024-Update | |
LOC_Os11g06750 | No alias | ribosomal protein L3, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os12g07010 | No alias | ribosomal protein L3, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10432758g0010 | No alias | (p35684|rl3_orysj : 667.0) 60S ribosomal protein L3... | 0.05 | Orthogroups_2024-Update | |
MA_124178g0010 | No alias | (p35684|rl3_orysj : 658.0) 60S ribosomal protein L3... | 0.03 | Orthogroups_2024-Update | |
Mp1g18990.1 | No alias | component RPL3 of LSU proteome component | 0.09 | Orthogroups_2024-Update | |
Potri.002G066200 | No alias | ribosomal protein 1 | 0.08 | Orthogroups_2024-Update | |
Potri.005G194500 | No alias | ribosomal protein 1 | 0.06 | Orthogroups_2024-Update | |
Pp1s330_36V6 | No alias | ribosomal protein l3 | 0.18 | Orthogroups_2024-Update | |
Seita.7G290900.1 | No alias | component *(uL3) of large ribosomal-subunit (LSU) proteome | 0.12 | Orthogroups_2024-Update | |
Seita.8G046000.1 | No alias | component *(uL3) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
Sobic.005G050500.1 | No alias | component *(uL3) of large ribosomal-subunit (LSU) proteome | 0.21 | Orthogroups_2024-Update | |
Sobic.006G216600.1 | No alias | component *(uL3) of large ribosomal-subunit (LSU) proteome | 0.23 | Orthogroups_2024-Update | |
Solyc01g104590 | No alias | ribosomal protein L3 | 0.25 | Orthogroups_2024-Update | |
Sopen01g045870 | No alias | Ribosomal protein L3 | 0.05 | Orthogroups_2024-Update | |
Sopen01g047100 | No alias | Ribosomal protein L3 | 0.25 | Orthogroups_2024-Update | |
evm.model.contig_2059.33 | No alias | (at1g61580 : 514.0) R-protein L3 B (RPL3B); FUNCTIONS... | 0.2 | Orthogroups_2024-Update | |
evm.model.tig00000025.50 | No alias | (p35684|rl3_orysj : 551.0) 60S ribosomal protein L3... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001882 | nucleoside binding | IEP | Predicted GO |
MF | GO:0001883 | purine nucleoside binding | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003743 | translation initiation factor activity | IEP | Predicted GO |
MF | GO:0004146 | dihydrofolate reductase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005525 | GTP binding | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006497 | protein lipidation | IEP | Predicted GO |
BP | GO:0006505 | GPI anchor metabolic process | IEP | Predicted GO |
BP | GO:0006506 | GPI anchor biosynthetic process | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006553 | lysine metabolic process | IEP | Predicted GO |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006661 | phosphatidylinositol biosynthetic process | IEP | Predicted GO |
BP | GO:0006760 | folic acid-containing compound metabolic process | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
MF | GO:0008839 | 4-hydroxy-tetrahydrodipicolinate reductase | IEP | Predicted GO |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0009085 | lysine biosynthetic process | IEP | Predicted GO |
BP | GO:0009089 | lysine biosynthetic process via diaminopimelate | IEP | Predicted GO |
BP | GO:0009396 | folic acid-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0010011 | auxin binding | IEP | Predicted GO |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
MF | GO:0032549 | ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Predicted GO |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0042398 | cellular modified amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0042562 | hormone binding | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0043648 | dicarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:0046451 | diaminopimelate metabolic process | IEP | Predicted GO |
BP | GO:0046653 | tetrahydrofolate metabolic process | IEP | Predicted GO |
BP | GO:0046654 | tetrahydrofolate biosynthetic process | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000597 | Ribosomal_L3 | 23 | 392 |
No external refs found! |