HORVU4Hr1G024710.12

Description : heavy chain of clathrin triskelion

Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Hordeum vulgare: HORVU4Hr1G024710.12
Cluster	HCAA Clusters: Cluster_280

Target	Alias	Description	ECC score	Gene Family Method
Bradi4g26877	No alias	Clathrin, heavy chain	0.03	Orthogroups_2024-Update
Brara.A03422.1	No alias	heavy chain of clathrin triskelion	0.05	Orthogroups_2024-Update
Brara.C03355.1	No alias	heavy chain of clathrin triskelion	0.02	Orthogroups_2024-Update
Cre02.g101400	No alias	Clathrin, heavy chain	0.02	Orthogroups_2024-Update
Glyma.02G228400	No alias	Clathrin, heavy chain	0.04	Orthogroups_2024-Update
Glyma.02G258200	No alias	Clathrin, heavy chain	0.02	Orthogroups_2024-Update
Glyma.14G195400	No alias	Clathrin, heavy chain	0.04	Orthogroups_2024-Update
Kfl00232_0230	kfl00232_0230_v1.1	(at3g11130 : 2670.0) Clathrin, heavy chain; FUNCTIONS...	0.02	Orthogroups_2024-Update
Mp6g19660.1	No alias	heavy chain of clathrin triskelion	0.03	Orthogroups_2024-Update
Pp1s147_10V6	No alias	F9F8.6; clathrin heavy chain, putative [KO:K04646]...	0.04	Orthogroups_2024-Update
Pp1s7_102V6	No alias	F9F8.6; clathrin heavy chain, putative [KO:K04646]...	0.09	Orthogroups_2024-Update
Seita.7G333500.1	No alias	heavy chain of clathrin triskelion	0.04	Orthogroups_2024-Update
Seita.8G020100.1	No alias	heavy chain of clathrin triskelion	0.03	Orthogroups_2024-Update
Sobic.005G003300.1	No alias	heavy chain of clathrin triskelion	0.02	Orthogroups_2024-Update
Sobic.008G003700.1	No alias	heavy chain of clathrin triskelion	0.03	Orthogroups_2024-Update
Solyc03g096000	No alias	Clathrin heavy chain (AHRD V3.3 *** K4BJ22_SOLLC)	0.02	Orthogroups_2024-Update
Sopen03g026100	No alias	Region in Clathrin and VPS	0.04	Orthogroups_2024-Update
evm.model.tig00000042.11	No alias	(at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	16Dec
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	16Dec
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predicted GO
MF	GO:0003774	motor activity	IEP	Predicted GO
MF	GO:0003777	microtubule motor activity	IEP	Predicted GO
MF	GO:0004843	thiol-dependent ubiquitin-specific protease activity	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005575	cellular_component	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006928	movement of cell or subcellular component	IEP	Predicted GO
BP	GO:0007017	microtubule-based process	IEP	Predicted GO
BP	GO:0007018	microtubule-based movement	IEP	Predicted GO
MF	GO:0008017	microtubule binding	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015631	tubulin binding	IEP	Predicted GO
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
BP	GO:0016579	protein deubiquitination	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Predicted GO
CC	GO:0030117	membrane coat	IEP	Predicted GO
CC	GO:0030118	clathrin coat	IEP	Predicted GO
CC	GO:0030120	vesicle coat	IEP	Predicted GO
CC	GO:0030125	clathrin vesicle coat	IEP	Predicted GO
CC	GO:0030126	COPI vesicle coat	IEP	Predicted GO
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Predicted GO
CC	GO:0030132	clathrin coat of coated pit	IEP	Predicted GO
CC	GO:0031090	organelle membrane	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044425	membrane part	IEP	Predicted GO
CC	GO:0044431	Golgi apparatus part	IEP	Predicted GO
CC	GO:0044433	cytoplasmic vesicle part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
CC	GO:0044459	plasma membrane part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0070646	protein modification by small protein removal	IEP	Predicted GO
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098796	membrane protein complex	IEP	Predicted GO
CC	GO:0098797	plasma membrane protein complex	IEP	Predicted GO
MF	GO:0101005	ubiquitinyl hydrolase activity	IEP	Predicted GO
BP	GO:1901264	carbohydrate derivative transport	IEP	Predicted GO
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000547	Clathrin_H-chain/VPS_repeat	599	734
IPR000547	Clathrin_H-chain/VPS_repeat	893	1032
IPR000547	Clathrin_H-chain/VPS_repeat	446	584
IPR000547	Clathrin_H-chain/VPS_repeat	303	428
IPR000547	Clathrin_H-chain/VPS_repeat	745	884
IPR000547	Clathrin_H-chain/VPS_repeat	10	143
IPR000547	Clathrin_H-chain/VPS_repeat	154	293

External Links

No external refs found!

HORVU4Hr1G024710.12

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation