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  5. HORVU4Hr1G034750.1

HORVU4Hr1G034750.1


Description : component *(PRPF4) of spliceosomal U4/U6 snRNP


Gene families : OG_42_0004189 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004189_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G034750.1
Cluster HCAA Clusters: Cluster_193

Target Alias Description ECC score Gene Family Method Actions
PSME_00040762-RA No alias (at2g41500 : 516.0) Encodes LACHESIS (LIS), a protein... 0.03 Orthogroups_2024-Update
Potri.006G045800 No alias WD-40 repeat family protein / small nuclear... 0.02 Orthogroups_2024-Update
Solyc04g016510 No alias Transducin/WD40 repeat-like superfamily protein (AHRD... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 285 322
IPR001680 WD40_repeat 245 281
IPR001680 WD40_repeat 214 239
IPR001680 WD40_repeat 333 364
IPR001680 WD40_repeat 372 406
IPR001680 WD40_repeat 455 491
IPR014906 PRP4-like 82 110
No external refs found!