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  5. HORVU4Hr1G054860.1

HORVU4Hr1G054860.1


Description : EC_3.1 hydrolase acting on ester bond & pectin methylesterase


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Hordeum vulgare: HORVU4Hr1G054860.1
Cluster HCAA Clusters: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
101118 No alias pectin methylesterase PCR fragment F 0.04 Orthogroups_2024-Update
A4A49_32529 No alias putative pectinesterasepectinesterase inhibitor 28 0.02 Orthogroups_2024-Update
A4A49_38041 No alias putative pectinesterasepectinesterase inhibitor 36 0.02 Orthogroups_2024-Update
At5g49180 No alias Pectinesterase [Source:UniProtKB/TrEMBL;Acc:A0A178UKT8] 0.02 Orthogroups_2024-Update
Bradi1g16780 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Brara.A00470.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.03 Orthogroups_2024-Update
Brara.I03256.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
GRMZM2G060400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.02G008400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
MA_10435891g0010 No alias (o04887|pme2_citsi : 389.0) Pectinesterase-2 precursor... 0.03 Orthogroups_2024-Update
PSME_00043969-RA No alias (at1g53830 : 497.0) encodes a pectin methylesterase;... 0.02 Orthogroups_2024-Update
PSME_00048380-RA No alias (at4g02330 : 476.0) ATPMEPCRB; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
PSME_00054240-RA No alias (at4g02330 : 483.0) ATPMEPCRB; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
Potri.014G067100 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Seita.2G441400.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.3G370800.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.6G168500.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Seita.7G123200.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.003G148400.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.05 Orthogroups_2024-Update
Sobic.004G321600.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.05 Orthogroups_2024-Update
Solyc03g123630 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Solyc06g051960 No alias Pectinesterase (AHRD V3.3 *** K4C5Y2_SOLLC) 0.04 Orthogroups_2024-Update
Solyc07g064170 No alias pectin esterase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA 16Dec
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 242 538
IPR006501 Pectinesterase_inhib_dom 44 192
No external refs found!